PUBLICATIONS/PREPRINTS

2018

2017

2016

2015

2014

2013

2012

2011

2010

2009

CONFERENCE PRESENTATIONS

2018

  • Toward the mesoscopic whole-brain neural connectivity in marmosets

    Huo B-X, Lin MK, Takahashi YS, Hanada M, Nagashima J, Tolpygo AS, Lee BC, Miller MI, Rosa MGP, Okano H, Mitra PP. Oral symposium presented at: Winter Conference on Brain Research; 2018 Jan 14-19; Whistler, BC, Canada

  • Comprehensive image processing pipeline for marmoset brain connectivity mapping

    Lin MK, Takahashi YS, Hanada M, Nagashima J, Huo B-X, Tolpygo AS, Lee BC, Miller MI, Rosa MGP, Okano H, Mitra PP. Poster session presented at: Japanese Society for Marmoset Research; 2018 Jan 16-18; Kyoto University, JP

  • Computational pipeline for marmoset brain connectivity mapping using injections of antero- and retrograde tracers on a brain-wide grid

    Mitsutoshi H, Nagashima J, Takahashi YS, Lin MK, Huo B-X, Tolpygo AS, Rosa MGP, Okano H, Mitra PP. Poster session presented at: Japanese Society for Marmoset Research; 2018 Jan 16-18; Kyoto University, JP

2017

2016

  • A high-throughput neurohistological pipeline for whole-brain mesoscale circuit mapping for Marmoset

    Mitra, P. P., Takahashi, Y. S., Weber, K., Lin, M. K., Hossain, K., Huo, B., Tolpygo, A. S., Ferrante, D. D., Hata, J., Chan, J., Mizukami, H., Watakabe, A., Yamamori, T., Kishi, N., Iriki, A., Rosa, M. G., Sasaki, E., Okano, H. Society for Neuroscience, 2016. San Diego, CA. Program No. 291.04.

  • Assembly of a High Efficiency Computational Pipeline for Marmoset Brain Mapping

    Lin MK, Takahashi YS, Weber K, Huo B-X, Hanada M, Tolpygo AS, Ferrante D, Rosa MGP, Okano H, Mitra PP. Poster session presented at: Japanese Society for Marmoset Research; 2016 Dec 12-14; Tokyo, JP

  • Optimized Sequential Techniques for Marmoset Neural Circuit Mapping

    Weber K, Lin MK, Takahashi YS, Hanada M, Huo B-X, Tolpygo AS, Ferrante D, Rosa MGP, Okano H, Mitra PP. Poster session presented at: Japanese Society for Marmoset Research; 2016 Dec 12-14; Tokyo, JP

2015

2014

  • Whole rat brain analysis of anterograde tracers from motor cortex and retrograde tracers from cervical spinal cord: Validation of an efficient, automated method with stereology

    Carmel, J. B., Mechler, F., Mukherjee, A., Wen, T., Tolpygo, A., Mitra, P. (2014) Meeting of the Society for Neuroscience, Washington, D.C.

  • The microanatomical origin of the high-field magnetic resonance imaging signal in the marmoset cerebral cortex: myelin sheaths or cell bodies?

    Geyer, S., Reimann, K., Weiss, M., Rose, D., Silva, A. C., Rosa, M. G. P., Pinskiy, V., Tolpygo, A., Mitra, P. P., Turner, R. (2014). Meeting of the Society for Neuroscience, Washington, D.C.

2013

Earlier

PDF ] : Carmel, J. B., Mechler, F., Mukherjee, A., Wen, T., Tolpygo, A., Mitra, P., Whole rat brain analysis of anterograde tracers from motor cortex and retrograde tracers from cervical spinal cord: Validation of an efficient, automated method with stereology (2014). Meeting of the Society for Neuroscience, Washington, D.C.

PDF ] : Giese, G., Scherbarth, A., Pinskiy, V., Tolpygo, A., Mechler, F., Mitra, P., Combining brain clearing and light-sheet fluorescence microscopy with tape-transfer assisted sectioning and histochemistry for whole mouse brain and spinal cord imaging (2014). Meeting of the Society for Neuroscience, Washington, D.C.

PDF ] : Geyer, S., Reimann, K., Weiss, M., Rose, D., Silva, A. C., Rosa, M. G. P., Pinskiy, V., Tolpygo, A., Mitra, P. P., Turner, R., The microanatomical origin of the high-field magnetic resonance imaging signal in the marmoset cerebral cortex: myelin sheaths or cell bodies? (2014). Meeting of the Society for Neuroscience, Washington, D.C.

PDF ] : Shewcraft, R., Pinskiy, V., Tolpygo, A., Mukherjee, A., Putrino, D., Wong, Y. T., Mitra, P. P., Pesaran, B. Dissecting long-range circuits in macaque cortex by registering optogenetically driven neural activity with anatomical connectivity (2013). Meeting of the Society for Neuroscience, San Diego, CA. 

[PDF ] : Mukherjee, A., Mechler, F., Pinsksiy, V., Tolpygo, A., Grange, P., Mitra, P. Software tools for reconstruction of 3D projection patterns for injection-based tractography (2013). Meeting of the Society for Neuroscience, San Diego, CA.

[ PDF ] : Grange, P., Mukherjee, A., Pinskiy, V., Tolpygo, A., Zheng, L., Uchida, N., Watabe-Uchida, M., Mitra, P. Automated analysis of the density of monosynaptic inputs to VTA dopamine neurons (2013). Meeting of the Society for Neuroscience, San Diego, CA. 

[ PDF ] : Sorooshyari, S., Pinskiy, V., Tolpygo, A., Mitra, P.  Quantitative modeling of tracer injections into brain tissue (2013). Meeting of the Society for Neuroscience, San Diego, CA.

[ PDF ] : Pinskiy, V., Mukherjee, A., Tolpygo, A., Badea, A., Johnson, A.G., Mitra, P. P. Combining high resolution mri and dti with dense whole-brain histology for mouse (2013). Meeting of the Society for Neuroscience, San Diego, CA.

PDF ] : Grange P., Bohland J. W., Hawrylycz, M., Mitra, P. P. A software suite for multivariate analysis of brain-wide gene-expression maps (2012). Meeting of the Society for Neuroscience, New Orleans, LA.

PDF ] : Pinskiy V, Tolpygo AS, Franciotti N, Weber K, Mitra PP. Whole Skull and Spinal Cord Cryosectioning of Adult Mouse (2012). Meeting of the Society for Neuroscience, New Orleans, LA.

PDF ] : Grange P, Okaty BW, Nelson SB, Hawrylycz M, Mitra PP, Distribution of cell types in the mouse brain from the Allen Atlas of the adult mouse brain (2012). Society for Neuroscience Meeting, Washington, DC.

PDF ] : Mukhopadhyay S, Grange P, Sengupta A, Mitra PP, Inferences about brain evolution from brain-wide gene-expression maps (2012). Society for Neuroscience Meeting, Washington, DC.

PDF ] : Pinskiy V, Krishnan K, Mukhopadhyay S, Collins Z, Tolpygo AS, Huang JZ, Mitra PP, High-Throughput Whole Brain Neuroanatomical mapping of GABAergic cell types in C57BL/6 mice (2011). Society for Neuroscience Meeting, Washington, DC.

PDF ] : Pinskiy V, Jones J, Wang H, Cox H, Mitra PP. Tape-transfer assisted cryosectioning for the Mouse Brain Architecture Project (2010). Meeting of the Society for Neuroscience, San Diego, CA.

PDF ] : Grange P, Pologruto T, Pinskiy V, Wang H, Khabbaz A, Spring S, Yu L, Germann J, Henkelman M, Mitra PP. Computer-guided stereotactic injections for the Mouse Brain Architecture Project (2010). Meeting of the Society for Neuroscience, San Diego, CA.

PDF ] : Grange P and Mitra PP.  Marker genes and the anatomy of the mouse brain (2010). Meeting of the Society for Neuroscience, San Diego, CA.

PDF ] : Bohland JW, Bokil, H Pathak S, Lin JM, Lee CK, Ng L, Osorio-Duque F, Lau C, Herrera D, Hawrylycz M, Mitra PP. Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy (2008). Meeting of the Society for Neuroscience, Washington, D.C.

PDF ] : Bokil H, Bohland JW, Pathak S, Lin JM, Lee CK, Ng L, Osorio-Duque F, Lau C, Herrera D, Hawrylycz M, Mitra PP. Spatial correlation and localization patterns of gene expression in the mouse brain (2008). Meeting of the Society for Neuroscience, Washington, D.C.

[ PDF ] : Lin JM, Bohland JW, Andrews PA, Iossifov I, Yankama B, Kulkarni J, Wu C, Berwick RC, Di Sciullo AM, Mitra PP. A literature mining and curation system for neuroscience knowledge discovery (2008). Meeting of the Society for Neuroscience, Washington, D.C.

PPT ] : Karten HJ, Brzozowska-Prechtl A, Prechtl J, Wang H, Mitra PP.Digital Atlas of the Zebra Finch Brain (Taeniopygia Guttata): a Dimensional and High Resolution Photo Atlas (2008). Meeting of the Society for Neuroscience, Washington, D.C.

[ PDF ] : Bohland JW, Bokil H, Wu C, Breiter HC, Makris N, Kennedy DN, Allen CB, Mitra PP. Quantitative comparison of anatomical parcellation schemes for MRI (2007). Meeting of the Society for Neuroscience, San Diego, CA.

[ PDF ] : Lin JM, Andrews PA, Burns GA, Bohland JW, Allen CB, Mitra PP. Community structure of neuroscience research: inferences from a co-authorship graph of Society for Neuroscience meeting abstracts (2007). Meeting of the Society for Neuroscience, San Diego, CA.