License and Citation Policy

Material made public on the Brain Architecture Project is licensed under a Creative Commons Attribution-ShareAlike 4.0 (CC-BY-SA) License. You are free to share (copy and redistribute) and adapt (remix, transform, and build upon) the material in any medium or format as long as you attribute the Brain Architecture Project (BAP) and provide a link to the two URLs above (the BAP and the CC license). If you adapt the BAP material, you must distribute your contributions under the same license as the BAP original.

How to Cite
Mouse Brain Wildtype Connectivity

Bohland JW, Wu C, Barbas H, Bokil H, Cline HT, Freed PJ, Greenspan RJ, Haber SN, Hawrylycz M, Herrera DG, Hilgetag CC, Huang ZJ, Jones A, Jones EG, Karten HJ, Kleinfeld D, Kotter R, Lester HA, Lin JM, Mikula S, Panksepp J, Safdieh J, Saper CB, Schiff ND, Stillman BW, Svoboda K, Swanson LW, Toga AW, Watson JD, Mitra PP (2009). A Proposal for a Coordinated Effort for the Determination of Brainwide Neuroanatomical Connectivity in Model Organisms at a Mesoscopic Scale. PLoS Computational Biology. 5(3): e1000334.

Mouse Brain Cell Type — Spatial Distribution

Kim Y, Yang GR, Pradhan K, Venkataraju KU, Bota M, García Del Molino LC, Fitzgerald G, Ram K, He M, Levine JM, Mitra PP, Huang ZJ, Wang X-J, Osten P. Brain-wide Maps Reveal Stereotyped Cell-Type-Based Cortical Architecture and Subcortical Sexual Dimorphism. Cell. 2017 Oct 5;171(2):456–469.e22. doi:

Mouse Brain Cell Type — Projections

Jeong M, Kim Y, Kim J, Ferrante DD, Mitra PP, Osten P, Kim D. Comparative three-dimensional connectome map of motor cortical projections in the mouse brain. Scientific Reports. 2016 Feb 2;6(1):20072.

Marmoset Brain Connectivity

Meng Kuan Lin, Yeonsook Shin Takahashi, Bing-Xing Huo, Mitsutoshi Hanada, Jaimi Nagashima, Junichi Hata, Alexander S Tolpygo, Keerthi Ram, Brian C Lee, Michael I Miller, Marcello G P Rosa, Erika Sasaki, Atsushi Iriki, Hideyuki Okano, Partha P Mitra (2018). A High-throughput Neurohistological Pipeline for Brain-Wide Mesoscale Connectivity Mapping of the Common Marmoset. bioRxiv. doi:

Zebra Finch Brain Architecture

Karten HJ, Brzozowska-Prechtl A, Prechtl J, Wang H, Mitra PP (2008) Digital Atlas of the Zebra Finch Brain (Taeniopygia Guttata): a Dimensional and High Resolution Photo Atlas, Society for Neuroscience 2008.

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